RNAi-mediated suppression of isoprene emission in poplar transiently impacts phenolic metabolism under high temperature and high light intensities: a transcriptomic and metabolomic analysis.
Identifieur interne : 003148 ( Main/Exploration ); précédent : 003147; suivant : 003149RNAi-mediated suppression of isoprene emission in poplar transiently impacts phenolic metabolism under high temperature and high light intensities: a transcriptomic and metabolomic analysis.
Auteurs : Katja Behnke [Allemagne] ; Andreas Kaiser ; Ina Zimmer ; Nicolas Brüggemann ; Dennis Janz ; Andrea Polle ; Rüdiger Hampp ; Robert H Nsch ; Jennifer Popko ; Philippe Schmitt-Kopplin ; Barbara Ehlting ; Heinz Rennenberg ; Csengele Barta ; Francesco Loreto ; Jörg-Peter SchnitzlerSource :
- Plant molecular biology [ 1573-5028 ] ; 2010.
Descripteurs français
- KwdFr :
- Amorces ADN (génétique), Analyse de profil d'expression de gènes (MeSH), Butadiènes (métabolisme), Gènes de plante (MeSH), Hémiterpènes (génétique), Hémiterpènes (métabolisme), Interférence par ARN (MeSH), Lumière (MeSH), Modèles biologiques (MeSH), Métabolisme glucidique (MeSH), Métabolome (MeSH), Pentanes (métabolisme), Peroxyde d'hydrogène (métabolisme), Phénols (métabolisme), Populus (génétique), Populus (métabolisme), Régulation négative (MeSH), Saisons (MeSH), Stress physiologique (MeSH), Sécheresses (MeSH), Séquence nucléotidique (MeSH), Température élevée (MeSH), Terpènes (métabolisme), Végétaux génétiquement modifiés (MeSH).
- MESH :
- génétique : Amorces ADN, Hémiterpènes, Populus.
- métabolisme : Butadiènes, Hémiterpènes, Pentanes, Peroxyde d'hydrogène, Phénols, Populus, Terpènes.
- Analyse de profil d'expression de gènes, Gènes de plante, Interférence par ARN, Lumière, Modèles biologiques, Métabolisme glucidique, Métabolome, Régulation négative, Saisons, Stress physiologique, Sécheresses, Séquence nucléotidique, Température élevée, Végétaux génétiquement modifiés.
English descriptors
- KwdEn :
- Base Sequence (MeSH), Butadienes (metabolism), Carbohydrate Metabolism (MeSH), DNA Primers (genetics), Down-Regulation (MeSH), Droughts (MeSH), Gene Expression Profiling (MeSH), Genes, Plant (MeSH), Hemiterpenes (genetics), Hemiterpenes (metabolism), Hot Temperature (MeSH), Hydrogen Peroxide (metabolism), Light (MeSH), Metabolome (MeSH), Models, Biological (MeSH), Pentanes (metabolism), Phenols (metabolism), Plants, Genetically Modified (MeSH), Populus (genetics), Populus (metabolism), RNA Interference (MeSH), Seasons (MeSH), Stress, Physiological (MeSH), Terpenes (metabolism).
- MESH :
- chemical , genetics : DNA Primers, Hemiterpenes.
- chemical , metabolism : Butadienes, Hemiterpenes, Hydrogen Peroxide, Pentanes, Phenols, Terpenes.
- genetics : Populus.
- metabolism : Populus.
- Base Sequence, Carbohydrate Metabolism, Down-Regulation, Droughts, Gene Expression Profiling, Genes, Plant, Hot Temperature, Light, Metabolome, Models, Biological, Plants, Genetically Modified, RNA Interference, Seasons, Stress, Physiological.
Abstract
In plants, isoprene plays a dual role: (a) as thermo-protective agent proposed to prevent degradation of enzymes/membrane structures involved in photosynthesis, and (b) as reactive molecule reducing abiotic oxidative stress. The present work addresses the question whether suppression of isoprene emission interferes with genome wide transcription rates and metabolite fluxes in grey poplar (Populus x canescens) throughout the growing season. Gene expression and metabolite profiles of isoprene emitting wild type plants and RNAi-mediated non-isoprene emitting poplars were compared by using poplar Affymetrix microarrays and non-targeted FT-ICR-MS (Fourier transform ion cyclotron resonance mass spectrometry). We observed a transcriptional down-regulation of genes encoding enzymes of phenylpropanoid regulatory and biosynthetic pathways, as well as distinct metabolic down-regulation of condensed tannins and anthocyanins, in non-isoprene emitting genotypes during July, when high temperature and light intensities possibly caused transient drought stress, as indicated by stomatal closure. Under these conditions leaves of non-isoprene emitting plants accumulated hydrogen peroxide (H(2)O(2)), a signaling molecule in stress response and negative regulator of anthocyanin biosynthesis. The absence of isoprene emission under high temperature and light stress resulted transiently in a new chemo(pheno)type with suppressed production of phenolic compounds. This may compromise inducible defenses and may render non-isoprene emitting poplars more susceptible to environmental stress.
DOI: 10.1007/s11103-010-9654-z
PubMed: 20526857
PubMed Central: PMC3128716
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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last="Behnke">Katja Behnke</name><affiliation wicri:level="1"><nlm:affiliation>Institute for Meteorology and Climate Research, Karlsruhe Institute of Technology, Garmisch-Partenkirchen, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute for Meteorology and Climate Research, Karlsruhe Institute of Technology, Garmisch-Partenkirchen</wicri:regionArea><wicri:noRegion>Garmisch-Partenkirchen</wicri:noRegion><wicri:noRegion>Garmisch-Partenkirchen</wicri:noRegion><wicri:noRegion>Garmisch-Partenkirchen</wicri:noRegion></affiliation></author><author><name sortKey="Kaiser, Andreas" sort="Kaiser, Andreas" uniqKey="Kaiser A" first="Andreas" last="Kaiser">Andreas Kaiser</name></author><author><name sortKey="Zimmer, Ina" sort="Zimmer, Ina" uniqKey="Zimmer I" first="Ina" last="Zimmer">Ina Zimmer</name></author><author><name sortKey="Bruggemann, Nicolas" sort="Bruggemann, Nicolas" uniqKey="Bruggemann N" first="Nicolas" last="Brüggemann">Nicolas Brüggemann</name></author><author><name sortKey="Janz, Dennis" sort="Janz, Dennis" uniqKey="Janz D" first="Dennis" last="Janz">Dennis Janz</name></author><author><name sortKey="Polle, Andrea" sort="Polle, Andrea" uniqKey="Polle A" first="Andrea" last="Polle">Andrea Polle</name></author><author><name sortKey="Hampp, Rudiger" sort="Hampp, Rudiger" uniqKey="Hampp R" first="Rüdiger" last="Hampp">Rüdiger Hampp</name></author><author><name sortKey="H Nsch, Robert" sort="H Nsch, Robert" uniqKey="H Nsch R" first="Robert" last="H Nsch">Robert H Nsch</name></author><author><name sortKey="Popko, Jennifer" sort="Popko, Jennifer" uniqKey="Popko J" first="Jennifer" last="Popko">Jennifer Popko</name></author><author><name sortKey="Schmitt Kopplin, Philippe" sort="Schmitt Kopplin, Philippe" uniqKey="Schmitt Kopplin P" first="Philippe" last="Schmitt-Kopplin">Philippe Schmitt-Kopplin</name></author><author><name sortKey="Ehlting, Barbara" sort="Ehlting, Barbara" uniqKey="Ehlting B" first="Barbara" last="Ehlting">Barbara Ehlting</name></author><author><name sortKey="Rennenberg, Heinz" sort="Rennenberg, Heinz" uniqKey="Rennenberg H" first="Heinz" last="Rennenberg">Heinz Rennenberg</name></author><author><name sortKey="Barta, Csengele" sort="Barta, Csengele" uniqKey="Barta C" first="Csengele" last="Barta">Csengele Barta</name></author><author><name sortKey="Loreto, Francesco" sort="Loreto, Francesco" uniqKey="Loreto F" first="Francesco" last="Loreto">Francesco Loreto</name></author><author><name sortKey="Schnitzler, Jorg Peter" sort="Schnitzler, Jorg Peter" uniqKey="Schnitzler J" first="Jörg-Peter" last="Schnitzler">Jörg-Peter Schnitzler</name></author></analytic><series><title level="j">Plant molecular biology</title><idno type="eISSN">1573-5028</idno><imprint><date when="2010" type="published">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence (MeSH)</term><term>Butadienes (metabolism)</term><term>Carbohydrate Metabolism (MeSH)</term><term>DNA Primers (genetics)</term><term>Down-Regulation (MeSH)</term><term>Droughts (MeSH)</term><term>Gene Expression Profiling (MeSH)</term><term>Genes, Plant (MeSH)</term><term>Hemiterpenes (genetics)</term><term>Hemiterpenes (metabolism)</term><term>Hot Temperature (MeSH)</term><term>Hydrogen Peroxide (metabolism)</term><term>Light (MeSH)</term><term>Metabolome (MeSH)</term><term>Models, Biological (MeSH)</term><term>Pentanes (metabolism)</term><term>Phenols (metabolism)</term><term>Plants, Genetically Modified (MeSH)</term><term>Populus (genetics)</term><term>Populus (metabolism)</term><term>RNA Interference (MeSH)</term><term>Seasons (MeSH)</term><term>Stress, Physiological (MeSH)</term><term>Terpenes (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Amorces ADN (génétique)</term><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Butadiènes (métabolisme)</term><term>Gènes de plante (MeSH)</term><term>Hémiterpènes (génétique)</term><term>Hémiterpènes (métabolisme)</term><term>Interférence par ARN (MeSH)</term><term>Lumière (MeSH)</term><term>Modèles biologiques (MeSH)</term><term>Métabolisme glucidique (MeSH)</term><term>Métabolome (MeSH)</term><term>Pentanes (métabolisme)</term><term>Peroxyde d'hydrogène (métabolisme)</term><term>Phénols (métabolisme)</term><term>Populus (génétique)</term><term>Populus (métabolisme)</term><term>Régulation négative (MeSH)</term><term>Saisons (MeSH)</term><term>Stress physiologique (MeSH)</term><term>Sécheresses (MeSH)</term><term>Séquence nucléotidique (MeSH)</term><term>Température élevée (MeSH)</term><term>Terpènes (métabolisme)</term><term>Végétaux génétiquement modifiés (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA Primers</term><term>Hemiterpenes</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Butadienes</term><term>Hemiterpenes</term><term>Hydrogen Peroxide</term><term>Pentanes</term><term>Phenols</term><term>Terpenes</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Amorces ADN</term><term>Hémiterpènes</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Butadiènes</term><term>Hémiterpènes</term><term>Pentanes</term><term>Peroxyde d'hydrogène</term><term>Phénols</term><term>Populus</term><term>Terpènes</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Carbohydrate Metabolism</term><term>Down-Regulation</term><term>Droughts</term><term>Gene Expression Profiling</term><term>Genes, Plant</term><term>Hot Temperature</term><term>Light</term><term>Metabolome</term><term>Models, Biological</term><term>Plants, Genetically Modified</term><term>RNA Interference</term><term>Seasons</term><term>Stress, Physiological</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Gènes de plante</term><term>Interférence par ARN</term><term>Lumière</term><term>Modèles biologiques</term><term>Métabolisme glucidique</term><term>Métabolome</term><term>Régulation négative</term><term>Saisons</term><term>Stress physiologique</term><term>Sécheresses</term><term>Séquence nucléotidique</term><term>Température élevée</term><term>Végétaux génétiquement modifiés</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">In plants, isoprene plays a dual role: (a) as thermo-protective agent proposed to prevent degradation of enzymes/membrane structures involved in photosynthesis, and (b) as reactive molecule reducing abiotic oxidative stress. The present work addresses the question whether suppression of isoprene emission interferes with genome wide transcription rates and metabolite fluxes in grey poplar (Populus x canescens) throughout the growing season. Gene expression and metabolite profiles of isoprene emitting wild type plants and RNAi-mediated non-isoprene emitting poplars were compared by using poplar Affymetrix microarrays and non-targeted FT-ICR-MS (Fourier transform ion cyclotron resonance mass spectrometry). We observed a transcriptional down-regulation of genes encoding enzymes of phenylpropanoid regulatory and biosynthetic pathways, as well as distinct metabolic down-regulation of condensed tannins and anthocyanins, in non-isoprene emitting genotypes during July, when high temperature and light intensities possibly caused transient drought stress, as indicated by stomatal closure. Under these conditions leaves of non-isoprene emitting plants accumulated hydrogen peroxide (H(2)O(2)), a signaling molecule in stress response and negative regulator of anthocyanin biosynthesis. The absence of isoprene emission under high temperature and light stress resulted transiently in a new chemo(pheno)type with suppressed production of phenolic compounds. This may compromise inducible defenses and may render non-isoprene emitting poplars more susceptible to environmental stress.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20526857</PMID><DateCompleted><Year>2010</Year><Month>09</Month><Day>03</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1573-5028</ISSN><JournalIssue CitedMedium="Internet"><Volume>74</Volume><Issue>1-2</Issue><PubDate><Year>2010</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Plant molecular biology</Title><ISOAbbreviation>Plant Mol Biol</ISOAbbreviation></Journal><ArticleTitle>RNAi-mediated suppression of isoprene emission in poplar transiently impacts phenolic metabolism under high temperature and high light intensities: a transcriptomic and metabolomic analysis.</ArticleTitle><Pagination><MedlinePgn>61-75</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s11103-010-9654-z</ELocationID><Abstract><AbstractText>In plants, isoprene plays a dual role: (a) as thermo-protective agent proposed to prevent degradation of enzymes/membrane structures involved in photosynthesis, and (b) as reactive molecule reducing abiotic oxidative stress. The present work addresses the question whether suppression of isoprene emission interferes with genome wide transcription rates and metabolite fluxes in grey poplar (Populus x canescens) throughout the growing season. Gene expression and metabolite profiles of isoprene emitting wild type plants and RNAi-mediated non-isoprene emitting poplars were compared by using poplar Affymetrix microarrays and non-targeted FT-ICR-MS (Fourier transform ion cyclotron resonance mass spectrometry). We observed a transcriptional down-regulation of genes encoding enzymes of phenylpropanoid regulatory and biosynthetic pathways, as well as distinct metabolic down-regulation of condensed tannins and anthocyanins, in non-isoprene emitting genotypes during July, when high temperature and light intensities possibly caused transient drought stress, as indicated by stomatal closure. Under these conditions leaves of non-isoprene emitting plants accumulated hydrogen peroxide (H(2)O(2)), a signaling molecule in stress response and negative regulator of anthocyanin biosynthesis. The absence of isoprene emission under high temperature and light stress resulted transiently in a new chemo(pheno)type with suppressed production of phenolic compounds. This may compromise inducible defenses and may render non-isoprene emitting poplars more susceptible to environmental stress.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Behnke</LastName><ForeName>Katja</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Institute for Meteorology and Climate Research, Karlsruhe Institute of Technology, Garmisch-Partenkirchen, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kaiser</LastName><ForeName>Andreas</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Zimmer</LastName><ForeName>Ina</ForeName><Initials>I</Initials></Author><Author ValidYN="Y"><LastName>Brüggemann</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Janz</LastName><ForeName>Dennis</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Polle</LastName><ForeName>Andrea</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Hampp</LastName><ForeName>Rüdiger</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Hänsch</LastName><ForeName>Robert</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Popko</LastName><ForeName>Jennifer</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Schmitt-Kopplin</LastName><ForeName>Philippe</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Ehlting</LastName><ForeName>Barbara</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Rennenberg</LastName><ForeName>Heinz</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Barta</LastName><ForeName>Csengele</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Loreto</LastName><ForeName>Francesco</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Schnitzler</LastName><ForeName>Jörg-Peter</ForeName><Initials>JP</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2010</Year><Month>06</Month><Day>06</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Plant Mol Biol</MedlineTA><NlmUniqueID>9106343</NlmUniqueID><ISSNLinking>0167-4412</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D002070">Butadienes</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D017931">DNA Primers</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D045782">Hemiterpenes</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010420">Pentanes</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010636">Phenols</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D013729">Terpenes</NameOfSubstance></Chemical><Chemical><RegistryNumber>0A62964IBU</RegistryNumber><NameOfSubstance UI="C005059">isoprene</NameOfSubstance></Chemical><Chemical><RegistryNumber>BBX060AN9V</RegistryNumber><NameOfSubstance UI="D006861">Hydrogen Peroxide</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002070" MajorTopicYN="N">Butadienes</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D050260" MajorTopicYN="N">Carbohydrate Metabolism</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017931" MajorTopicYN="N">DNA Primers</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015536" MajorTopicYN="N">Down-Regulation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055864" MajorTopicYN="N">Droughts</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D045782" MajorTopicYN="N">Hemiterpenes</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" 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